rs48525182 SNP Detail

Summary

• ID
  rs48525182
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:55552155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGAAGGT CGCTGCCACC
  AGGCCCTGAA GCTAACTAAA TCACAGCAGT GCTATGTGTA GGTATCTACT GAAGCTAGGA
  AATAATTACC TAGTTAAGGT AAGCAGTAAG AGGGAACTGA TATTTAGAAA CATTGTTAAG
  GGGAGAGCAA ACCAAAGGTG CTGGACTGCT GGAAAGCTGT TGAAAACCCG CCGACCTGTG
  S
  CTGGTCACAG AGAACACAGC CGACCTGTGC CTGGTCACTC AGAACACAGC CAGCCTGGTG
  TCTGGACACC AAGAGCAGAG CCGACTGTCC CCCAGTCACA CACTAGCTAC TATTTCATTG
  TCAGAGTCTG GTGGACAGAG GAACAACAAG CATAGGCTCA GAAATAGTCT TAATCCCAAA
  CCTTGTATCC TTGCAAGGTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135189233	ENSMUSSNP2503237	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48525182					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55552155 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nbea	neurobeachin			Intron
				Noncoding-Transcript-Variant
Rr576982	regulatory region 576982			193 bp distal