rs48518301 SNP Detail

Summary

• ID
  rs48518301
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127742473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCGTCACA CAGTAAGTAA
  GCTTTTAGAC ACTGACTGAC CTGGTCTCCC ACTTTGCCTT TATCACTTTA TTTAACCCTA
  ATCACAATTT TATTTAAAAA ATATTAATTT ATTGAGATAA TAATATAATT ACATCATTTC
  CCCTTTTCCT TTCCTTCCCT CTAAACCTTC CCATATATTT CTCTTTGCTC TCTTTCAAGT
  M
  CATGGCCTTT TTTTTCCATT AATTTTTAAC ATGTATATGT GTTCCAAAAT GCAAAAATAC
  AACCTGCTCA GTCTATGTTA CTTGTATGTA TGTTTTTAGG GCTGACCATT TGATCTTAGA
  TAACCAGCTA GTGTGTTCTT CACAGGGGAA GACTATTTAT TTACCTGTAG TTTGTTTTGT
  AGGGTGGAGG TCTGGTGATC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320958546	CHEV_3_127651742	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48518301					SNP	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss135875933	ENSMUSSNP687181	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127742473 () rs orientation: forward

Symbol	Name	Function Class
9830132P13Rik	RIKEN cDNA 9830132P13 gene	within coordinates
Rr398010	regulatory region 398010	197 bp upstream
Rr584909	regulatory region 584909	204 bp distal
Rr584910	regulatory region 584910	49 bp proximal
Rr584911	regulatory region 584911	276 bp proximal
Tssr31619	transcription start site region 31619	1479 bp upstream