rs48514617 SNP Detail

Summary

• ID
  rs48514617
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137096418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATA AACTCTAAGC CAGCCGGCAC
  W
  TTAGGGTGTG AGCCAGTCAA AAGAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147603683	ENSMUSSNP4104844	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss321363415	CHEV_4_136925022	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48514617					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137096418 () rs orientation: forward

Symbol	Name	Function Class
Gm69272	predicted gene, 69272	within coordinates
Gm69290	predicted gene, 69290	640 bp downstream
Rr602600	regulatory region 602600	1093 bp distal
Rr602601	regulatory region 602601	575 bp distal
Rr602602	regulatory region 602602	927 bp proximal
Rr602603	regulatory region 602603	1432 bp proximal