rs48513557 SNP Detail

Summary

• ID
  rs48513557
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19217667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTTCTGC TTCTGTGTGC
  AGACACGCGA ACAGAATAGT TTATCTTCAG CAAGTCTTCC AGGTCTGATA AAACAACCTG
  TAACCCTTCA TCCACGTCTG TGCGTCTTTA CCCAGAATCT TCGGACGTTT TTTTGTAGTT
  TTTACTATGA ACGTCGACAC TGTTTGGCCT CTCTGGATTT CGTTCATTTC TTTTCAGTGC
  Y
  GCTTTCTAGC AAAGCGAGGG ATGCGAAGTG CTTTTGTTGG GTTGGCCTAA GTGATTTGAC
  ATTGAAAAGA ATTTTGTCTT TTCTCTTGTC AGAGACTTGT GTTAAGAGAG TTCTCCAGTT
  CATCATGAAG TTTTGTTAAT GCTGTTTTCT ATTTATCAAA GTAAAGACAT ACTTGTTTTA
  TCGATACTAG TTACCGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss134665490	ENSMUSSNP2861367	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48513557					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19217667 () rs orientation: forward

Symbol	Name	Function Class
Armc1	armadillo repeat containing 1	mRNA-UTR
Cpgi13000	CpG island 13000	105 bp distal
Gm65410	predicted gene, 65410	within coordinates
Rr397613	regulatory region 397613	199 bp downstream
Rr573944	regulatory region 573944	449 bp distal
Rr573945	regulatory region 573945	651 bp distal
Rr573946	regulatory region 573946	195 bp distal
Rr573947	regulatory region 573947	within coordinates
Rr573948	regulatory region 573948	1900 bp proximal
Tssr32687	transcription start site region 32687	418 bp upstream