rs48508621 SNP Detail

Summary

• ID
  rs48508621
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19683098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTGACGT GGCGTTATGG
  AGCCCTTCCG TCAACCGGCT TGCCGCTCCC TTCGATAGCT CAGCTGGTAG AGCGGAGGAC
  TGTAGGCTTG TGGCTGTGGA CATCCTTAGG TCGCTGGTTC GATTCCGGCT CGAAGGAAAG
  AGCTTGCTAT TTTCTTTTAC CTTTTAATCC TATCTATGAG GCATGTTCGG AACAAATTTC
  Y
  ATGCCTCGCA GTGCGCTCCT CCTCCTCTAG GGGAGCACAT AAAGGCCAGA TGCCGGTGGA
  GGGGGATTAG CTCAAATGGT AGAGCGCTCG CTTAGCATGC GAGAGGTAGC GGGATCGATG
  CCCGCATCCT CCAGTTCCCC TTTTTTTGTC TTTGCATTTC TGTAGTTTTT CTTTTCATTG
  TTATATACCT CAATTGAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60376863	NES15884514	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48508621					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60376863	NES15884514	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19683098 () rs orientation: forward

Symbol	Name	Function Class
1700064H15Rik	RIKEN cDNA 1700064H15 gene	201 bp upstream
Cpgi13003	CpG island 13003	within coordinates
Cpgi13004	CpG island 13004	916 bp proximal
n-TAagc14	nuclear encoded tRNA alanine 14 (anticodon AGC)	61 bp upstream
n-TRacg3	nuclear encoded tRNA arginine 3 (anticodon ACG)	903 bp upstream
n-TYgta1	nuclear encoded tRNA tyrosine 1 (anticodon GTA)	487 bp downstream
n-TYgta2	nuclear encoded tRNA tyrosine 2 (anticodon GTA)	64 bp downstream
Rr574008	regulatory region 574008	268 bp distal
Rr574009	regulatory region 574009	within coordinates
Rr574010	regulatory region 574010	1290 bp proximal
Tssr32702	transcription start site region 32702	249 bp upstream