rs48504889 SNP Detail

Summary

• ID
  rs48504889
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130631844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTATAAC ATTGTTTCAT
  CAAGATACAA CTGTGTACCC AGTAATCCCA GCACTATGAA GTTGGGAGCA GGAGGACCAG
  GAGTTTAAGG TCATCCTCTG TTATACAGTG AGTCAAAGGC CAGCATTGAT TCCTTGACAC
  TGTCTCAAAA ACACAAAGCA AAACACATTT CCTAAGGCAA TGTTCCCACA GGTCTCCGTG
  Y
  TTTCTTCCTT CAGCATAACA TTTTACTATA CCCCACACCA GGCAAGCCCT CACTGTTATG
  ATGTCTCACA CTGATCAGAC ATTTCCTCTT GAGTGAGGCA AACTTTAAAA TTTATTAAAA
  CTGATGACAC ATCTCCAAGG GATATCCTAC AGCATTCTAG TTCCAATTTG CTAAATCTGG
  AGCAGCGGTT CTCAACTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145474335	ENSMUSSNP4168091	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48504889					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130631844 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm29427	predicted gene 29427			Intron
Pfkfb2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2			Intron
				Noncoding-Transcript-Variant
Rr417945	regulatory region 417945			153 bp distal