rs48502921 SNP Detail

Summary

• ID
  rs48502921
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150297903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATACT GACGTTTAAC TTGATGGGTC
  C
  TACATGAAGC TTATAATGGT GGAAT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148050303	ENSMUSSNP4911102	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321428658	CHEV_4_149587555	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48502921					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150297903 () rs orientation: forward

Symbol	Name	Function Class
Rr605222	regulatory region 605222	1518 bp distal
Rr605223	regulatory region 605223	1321 bp distal
Rr605224	regulatory region 605224	313 bp distal
Rr605225	regulatory region 605225	403 bp proximal
Rr605226	regulatory region 605226	566 bp proximal
Rr605227	regulatory region 605227	660 bp proximal