rs48501000 SNP Detail

Summary

• ID
  rs48501000
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153336105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTGTGTA CACTTGGTGC
  TACAGAGATC CAGGCCACTG AGGAACCTAC CGAGGTCCTG TTTCCAAACA CAAGAGGAGA
  GCTACAGCTC AGTTGTCCAG TGCTTGCCGA GAGGGCTGCA GTCTCTAGGT TCAAGCCTTA
  ATACTGACTG CAAAACAAGA ACAAGAACAA AGCCTGTCTT TAAATAACTC TAAGGCCTGC
  Y
  CTCCATGCCA AGATCTGCAC CAAGTATGCA TGGCTAACAG CACTTTAGCA TGAATCACGC
  TGAAGGAGCA TCCATTGTGA CCTCCATAGT CAATGCTCCA AAAAAACAAA CAAACAAACA
  AACAAAAAAC AACAACAACA AAAACCAAAT ACCAGCTTCA GTTAGAATGT TCTTGCCAAC
  ACTGTAAGAA TTACTAAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136110086	ENSMUSSNP4322421	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48501000					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153336105 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587712	regulatory region 587712			1564 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr32432	transcription start site region 32432			456 bp upstream
Tssr36231	transcription start site region 36231			653 bp downstream