rs48500649 SNP Detail

Summary

• ID
  rs48500649
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164508260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGCAGTT GTACAAATAC
  TTTAAATTCT CCATGTTTGT GATACATGCC TGTCTGTCAC ATTTCCCAAC ATACCTCTAC
  TATACCCTCC TTGTCATCCA GTTCTGACAT CCCTCTTCCT AAGTATCTTA GACTTCAACT
  TGTCAAGGAA ACTCCTCTGT GGCCACAGAT GGTGCTGTGC CCACATTATC TGCTGGACCA
  Y
  TGCTGTGTTG CACTGGCCTC TTTAGGTCCT CACCTCCTCA CTGACCACTC TAAATACTAA
  GATATCCAGA GGCCTGAAAC TGGAGATTAT TTATATTTTA ATGTCTTCTT ATTGAATTCA
  ATGCCTGACA CTTTGCAAGC ACATGTTTAA TGGGTAAGTG ACACGACAAA GGTTACACCC
  CCCACCCCTG TCCATTGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60336405	NES15836035	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48500649					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60336405	NES15836035	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164508260 () rs orientation: forward

Symbol	Name	Function Class
Gm37184	predicted gene, 37184	1243 bp upstream
Gm37853	predicted gene, 37853	within coordinates
Rr422251	regulatory region 422251	1727 bp distal
Rr422252	regulatory region 422252	950 bp proximal