rs48500255 SNP Detail

Summary

• ID
  rs48500255
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:10346244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTGGAAT GCAATGGTGA
  GCATAGGATA GACCCTTGTT CTCATAATTT GTGAAATACT CCAACAGTGA AAGGGGGCTA
  AAGGGGGAGA TGGTCCAGAA ATTACTGAGC CAACTTCTGA TGGTCAGCAT TGGCCTGACT
  GGCACACTGC AAGTCCTCTG CATTATTGCA AATTTCTAGA AACTTTATAG GAGTCGAATC
  Y
  GCATGAGTAT AGATTTCATC TAATATTTGT ATTAATTTTT CAAGAATTTC ATATGATCTA
  TTTTAATCAT ACTCGCCCCC TGTCTTCTCC TTAACTCCAC CCCCTCATAC CTTCCCTAAC
  TTTGTGTCTT TTTGTTTTAA TGGATAACCT ATCACCACCC ATTTGTGCTG CCCATATACT
  CTGGGTGCAG GGCCATCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134580795	ENSMUSSNP1430159	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320653245	CHEV_3_10281184	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48500255					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:10346244 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fabp12	fatty acid binding protein 12			Intron
				Noncoding-Transcript-Variant
Rr573601	regulatory region 573601			177 bp proximal
Rr573602	regulatory region 573602			1809 bp proximal