rs48499542 SNP Detail

Summary

• ID
  rs48499542
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:18908308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCTTGTG CAGTAGGAGA
  AACAAACATC AGAGTAAAGA GGAAGCCCGC ATAGAGCACA AGACACTTGG CCAGTTGTAC
  ATTTGATAGA TTAATAACAT GAAATACAAT AGGTAAGAAA GATCAATTAT TAGATGCTGA
  TTTGTTGATT CACTTAATGA TTCACTTCAA GCACTGGTTG CATTGCTTAT TGTCCTACAT
  S
  GCTTCTCCTG CTAACTGGAA CATAATAACC CAGACAAACA GCTGAAGCAA CAGGCCAATG
  CACTTAGCAA CCTGATCAAT CTCACTTGCT GGCTTGTCCA ACCTTGTGGT TTTAGAGCCT
  AAGATGAGAA TGCAAACTGG ACCTAATACC AAGGTCTTTC AGAAACTGTC ATGTGTTTGG
  TTTCTTCCAC TCTAATTGAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133043343	ENSMUSSNP6611892	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48499542					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18908308 () rs orientation: forward

Symbol	Name	Function Class
Rr626961	regulatory region 626961	906 bp distal