rs48497154 SNP Detail

Summary

• ID
  rs48497154
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146557101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGTTAAAGC CCCATCTGAA AACCAGCAGC ATTCCCACTG
  ATCTCAATAG GAGTAGAGTA GCAAGTGAAG GCTAGAATTG AAAATACTTC CACTGTAATG
  Y
  TCATGTAAGT GCTCAATTGG TGTTATTCAA GGGGCCAGTT TATTCCAGAA ACAGTAACTT
  TAAGTTGTGA AATTTCATTT TATTTGGGAT ACATAAAAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61097604	NES16606916	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	T	C	C	T	T		C	C	T	C		T
ss136046454	ENSMUSSNP387647	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
ss321011183	CHEV_3_146514310	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48497154					SNP	T	T	T	C	T	T	T	C	C	T	T	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61097604	NES16606916	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146557101 () rs orientation: forward

Symbol	Name	Function Class
Gm65628	predicted gene, 65628	59 bp downstream
Rr587096	regulatory region 587096	531 bp proximal
Rr587097	regulatory region 587097	1032 bp proximal
Rr587098	regulatory region 587098	1310 bp proximal
Tssr32369	transcription start site region 32369	1013 bp upstream
Ttll7	tubulin tyrosine ligase-like family, member 7	1021 bp upstream