rs48496191 SNP Detail

Summary

• ID
  rs48496191
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18438482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTATGAAA GACTAAGGCA
  TACTTAGTCT TAGAGCTGGA ATGTATCAAT CAGGTTGGCA CACTCACCTC ACCTGTCCAA
  CTAAAGAACA TTTAGTGGTC CACAAGGGGT TTCATGGTTT ATAGAAGTTA AAGTGTATTT
  AGCTGTTTTG AGATAAAGAG CATTTTATCT TTTCTAGATG CTAAAAACAA ACATGGGAAG
  K
  AACTTCCTGC ATTTTGTATT CACAGCTATA GTGTGATTTT ACCAATTGAA GATCTGTGGC
  AATCCTGCAT CAAGCAACAT TATTAAGGAA ATCATTTCTT CCTCCCCCAG TAGCTCCAAT
  AATAACAATT TCAAGTTGTA GACAGTCTTT TTTTAGACAC AATACAACTT ATAAGACTAG
  AGTGCATCAT AAAAAGACTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133034817	ENSMUSSNP4139713	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48496191					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18438482 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Intron
				Noncoding-Transcript-Variant
Gm40356	predicted gene, 40356			within coordinates
Rr626924	regulatory region 626924			1770 bp distal