rs48490459 SNP Detail

Summary

• ID
  rs48490459
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101471151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCAACTG ATCATAATCA
  AAAGAATAAC ACATTGCCAA AAGAGGAAGA CTTTAGAAAG CCTGGACTTA TTCAAACCAT
  GTTTCATATA GAGAAAATCT GACTGACGTT TTTAGCAAGG TATTAAATCT GCTTTTGGGC
  AGTAAGAAAA TGTGGACTTT AAAAATCTGT AACCTTGAGA TTACATAGAA AAGCACTAAG
  R
  CTATAAATGA CTCTTAATTA AAAAGTAAAA ATAAACAACC AGAGCTGGCT CTAGATAACT
  AAGCAAGCAT GACTTTATTA TACTTAATAG GTAGCTGTAG CTAACAGGTG CATTCTCTAA
  CTTCATTATT GAAAAATTTA TGACACCAGA TGACCTCCTA GACACTGAAG GTGACAATAC
  TGAGGCCATT TAAACCTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147079203	ENSMUSSNP4000338	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss320429686	CHEV_2_101480963	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48490459					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101471151 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	mRNA-UTR
Rr561526	regulatory region 561526	659 bp distal
Tssr25364	transcription start site region 25364	683 bp upstream
Tssr25365	transcription start site region 25365	570 bp upstream
Tssr25366	transcription start site region 25366	461 bp downstream
Tssr25367	transcription start site region 25367	757 bp downstream