rs48488072 SNP Detail

Summary

• ID
  rs48488072
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104622247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGG GAGGGGATCT AGGTCCCAGG
  M
  ACCAGCTGTG ACACAGCCCT GTGTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135570497	ENSMUSSNP3433702	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48488072					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104622247 () rs orientation: forward

Symbol	Name	Function Class
Gm64989	predicted gene, 64989	within coordinates
Rr397915	regulatory region 397915	413 bp downstream
Rr582582	regulatory region 582582	1820 bp distal
Rr582584	regulatory region 582584	554 bp distal
Rr582585	regulatory region 582585	570 bp distal
Rr582586	regulatory region 582586	within coordinates
Rr582587	regulatory region 582587	259 bp distal
Rr582588	regulatory region 582588	234 bp proximal