rs48486381 SNP Detail

Summary

• ID
  rs48486381
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137774399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCAGCGT GTGCACTGTT
  CTGGATTCAG GCGCCACACT GCCAGGAAAA GCAAGAGCAG TGGAGGCTAA AGACCTTGCA
  GTACAGAGCC CCTGAGATGG CCATGGGTGG CAGAGGCTTC AACGTGCACA TGCTTGCATG
  GAGAGATGTT GGACTTCCGT CATGAGATTA CACAGGGAAT TATGGGGTAT AGGACATGAG
  R
  TTACATTGGG GAGTTATGGG GTATAGGACA TGAGGTTACA TGGGGGAATT ACGGGTTGTG
  GGACATGAGA TTACATGGGG GAGTTATGGG GTATAGGACA TGAGGTTACA TGGGGGAATT
  ACGGGTTGTG GGACATGAGA TTACATGGGG AATTATGGGG TATAGGACAT GAGATTACAT
  GGGGAATTAC AGGTTGTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147630404	ENSMUSSNP6585907	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321370003	CHEV_4_137603003	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48486381					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137774399 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3			Intron
				Noncoding-Transcript-Variant
Rr602827	regulatory region 602827			1097 bp distal
Rr602828	regulatory region 602828			1005 bp distal
Tssr39818	transcription start site region 39818			1734 bp downstream
Tssr39819	transcription start site region 39819			1278 bp downstream