rs48485951 SNP Detail

Summary

• ID
  rs48485951
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150652932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTTCAGG TAGTACCCTG
  GAGTGCTCTG TGATGACTGT ATGCACTTAC TTTACCTGCA AAAAGCTAGT CACAGTTTAA
  GCATATCCTG TCAAGGTTTT TCAAAGTCCC TCCCAGTGCT AGATGTACAG TAACTCACCA
  GAGTGAATTC AGGGCCTCCT CTCCTACAGT GCTGTGCCAC CAGCCTCGGC TGCTCTCTTC
  S
  TACTCCACAA CTTGGGCCTC CCCAGGGAAC GCTCCACCTT CAACCCCTGG TCGACCATTG
  GATCTTAACT CCTCAAAGCT CAGTGCAGCC TGATCCTCAC TGCCCTCTAA AAGTCATCTA
  CAAGCAGTCA GTTTTTCTTT CTGCATACCT TGTCCTCCTT GGAGTTTCCA GAATGTTCCT
  ATGTCCTTCC TGGGCAACTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148055020	ENSMUSSNP4427578	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48485951					SNP	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150652932 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15352	CpG island 15352	579 bp proximal
Gm13091	predicted gene 13091	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr398883	regulatory region 398883	1993 bp downstream
Rr605335	regulatory region 605335	1840 bp distal
Rr605336	regulatory region 605336	within coordinates
Rr605337	regulatory region 605337	59 bp proximal
Rr605338	regulatory region 605338	1760 bp proximal
Tssr40415	transcription start site region 40415	1981 bp downstream
Tssr40416	transcription start site region 40416	1891 bp downstream
Tssr40417	transcription start site region 40417	341 bp upstream
Tssr40418	transcription start site region 40418	742 bp upstream
Tssr40419	transcription start site region 40419	774 bp upstream
Tssr40420	transcription start site region 40420	1009 bp upstream
Tssr40421	transcription start site region 40421	1063 bp upstream
Tssr40422	transcription start site region 40422	1725 bp upstream
Tssr44743	transcription start site region 44743	1599 bp upstream
Tssr44744	transcription start site region 44744	225 bp downstream
Tssr44745	transcription start site region 44745	1390 bp downstream
Tssr44746	transcription start site region 44746	1591 bp downstream
Tssr44747	transcription start site region 44747	1601 bp downstream
Tssr44748	transcription start site region 44748	1639 bp downstream
Tssr44749	transcription start site region 44749	1790 bp downstream