rs48485563 SNP Detail

Summary

• ID
  rs48485563
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153084883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCCAACCT GATCACATAG AGAATTCCAG AGTAGCCAGG
  GCTACATAGT GAGACTCTGG CAAAACAAAA CAAACAAAAA CCAGATAGAC CTTTGTGTTT
  R
  AAGCATTCAC AGCCTGCATA GACAGCCAAT ACAAAAAGCT GGAAAATGAA AGCAGACATA
  TAAATGACTG AAGTGTTTAT AGCTAAATGG TAAAGCATT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147988472	ENSMUSSNP6048335	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48485563					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153084883 () rs orientation: forward

Symbol	Name	Function Class
Plagl2	pleiomorphic adenoma gene-like 2	1605 bp upstream
Pofut1	protein O-fucosyltransferase 1	Intron
Rr567588	regulatory region 567588	1548 bp distal
Rr567589	regulatory region 567589	1375 bp distal
Rr567590	regulatory region 567590	986 bp distal
Tssr20882	transcription start site region 20882	1497 bp downstream
Tssr20883	transcription start site region 20883	1360 bp downstream
Tssr20884	transcription start site region 20884	1345 bp downstream
Tssr26895	transcription start site region 26895	1609 bp upstream
Tssr26896	transcription start site region 26896	1569 bp upstream
Tssr26897	transcription start site region 26897	1552 bp upstream
Tssr26898	transcription start site region 26898	1463 bp upstream
Tssr26899	transcription start site region 26899	1239 bp upstream