rs48484879 SNP Detail

Summary

• ID
  rs48484879
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38035231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTAG TGTAGAACAT GCTTTTCTTA
  G
  CCTGGGTTAC CTTAGTTAAT ATAAT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134819190	ENSMUSSNP4755798	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss320714502	CHEV_3_37880004	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48484879					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38035231 () rs orientation: forward

Symbol	Name	Function Class
Gm20755	predicted gene, 20755	within coordinates
Gm42751	predicted gene 42751	1710 bp upstream
Rr575602	regulatory region 575602	912 bp distal
Rr575603	regulatory region 575603	992 bp distal
Rr575604	regulatory region 575604	745 bp proximal