rs48480892 SNP Detail

Summary

• ID
  rs48480892
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:18908900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTCTGAGA TTTTATCTGA
  CCTTTGTCAC AATGACTAAG ATCAAGAAAA CATCTGAAAA AATAGTACTA GCAAGAATGT
  GGCATTGCAA ACTGGTACAG CCAGTAATAA TGGAGAAATC TCAAAACACT AAAGAGCTAC
  TATACAATCC AGCTTTATCA CTTCTGAGCA TATGCCCAAA GGACTATATA TCCTACTCCA
  Y
  GTTTACTTAG TCATGATGAT TGCTGCTTTA TCCACAGCAG GTAGAAAATG GAAACGACCT
  AAATGTCCTT CAGCTGAAGA ATGGATAATG AAAATGGGTA CACTATGTAC TATTGAATAC
  TATTCAGGTG TCAAGAAAAA CGAAACCATA AAATTTCCTG GTAAAGAATG GAACGGGAAA
  CTATTGTACT GGGTGAAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss133043367	ENSMUSSNP6079827	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48480892					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18908900 () rs orientation: forward

Symbol	Name	Function Class
Rr626961	regulatory region 626961	1498 bp distal