rs48479258 SNP Detail

Summary

• ID
  rs48479258
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153418766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGATCTAGGT CTGAGCCCCA ACACTCCCAC AAAAAACAAA
  ACAAGCAAAC TAAAAAACAC CAACATCCGC CGGGCGTGGT GGTGCACGCC TTTAATCCCA
  A
  CACTCGGGAG GCAGAGGCAG GCGGATTTCT GAGTTCGAGG CCAGCCTGGT CTACAAAGTG
  AGCTCCAGGA CAGCCAGGGC TATACAGAGA AACCCTGTT                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147997104	ENSMUSSNP5853851	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48479258					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153418766 () rs orientation: forward

Symbol	Name	Function Class
Rr567686	regulatory region 567686	353 bp distal
Rr567687	regulatory region 567687	214 bp proximal
Rr567688	regulatory region 567688	859 bp proximal