rs48474146 SNP Detail

Summary

• ID
  rs48474146
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:104515560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA CCACAGCCCT AGAGCCTTGT
  T
  AAATCCACAG TTCCCTGTAG CTTGA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147152794	ENSMUSSNP4793754	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320445334	CHEV_2_104525372	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48474146					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:104515560 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12000	CpG island 12000	105 bp proximal
Rr562107	regulatory region 562107	371 bp proximal
Rr562108	regulatory region 562108	1618 bp proximal
Tcp11l1	t-complex 11 like 1	Intron