rs48470975 SNP Detail

Summary

• ID
  rs48470975
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59802776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGTAAGG GTGACATGGT
  TCTTCTTTGG CAAAATACTA AATTGTGGGG CCTGGGGCCC TATCTCCTGA TAGGTCCCAG
  GCTTAGTGCC TGCCACTCCG TGTGGATGGG AAAGGGCCCA TGCGACTGGG TCTTGCTTCA
  AAGGTGGATA GTTTATTCTG GGGCGAGTAT GTCCGGCCAT GTCCTGAGGA ACAAAATGGG
  Y
  TGGGGGTACT CTGAAAGACA TGCTCTACTG TGGGAGTTAA TCATATATGT TTTAAATCGA
  GACAGGGACT CACTATGTAG CCCTGGCTGT CCTGGAATTC ACTTATGTAG GCCAAGCTGG
  TGGTGATATC AGTGAGGCAG GCTATAGCAG AGTTGGTGGT GATATCAGTG AGGCAGGCTA
  TAGCAGAGTT GGTGGTGATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146403211	ENSMUSSNP366918	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48470975					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59802776 () rs orientation: forward

Symbol	Name	Function Class
Rr398296	regulatory region 398296	630 bp upstream
Rr593142	regulatory region 593142	within coordinates