rs48470258 SNP Detail

Summary

• ID
  rs48470258
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:143630284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGAGCTC ACCTATCCTT
  GGACAGGCAC CAGAGTGTCC TTTCTGTTCA AGGATGTGAT GTCATTTAGG AGTTTTTCTG
  TAAAAAGAGA CAATGTTTTC ATAGTAGACC CTCAACTAAA AGACTTAATT GGTGTGCCTG
  AAACCAGCTT CCAGAGAGCC TGAAATGGGA GCATTCAGGG TCAGCCTGGC AACAGAGGAA
  S
  GGTCTGTCTT ATTAATGGCA AAAAAGGTGA AAGAACTTAA ATGAGAAAGC TGTGATATTG
  AAACCAAAAC ACTGTCATTG AAATTTAACC ATAAATTTGT CTAATTATAA ACATAACTGT
  TTGAGTGAAT TCAATGAGAA GATAAAACAG AACAGAAGAC AGCTGGTTCC TCGGGAGCTG
  TTCTAATAAA ATGAGTCTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60852180	NES15998101	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs48470258					SNP	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60852180	NES15998101	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143630284 () rs orientation: forward

Symbol	Name	Function Class
Cyth3	cytohesin 3	Intron
Rr624267	regulatory region 624267	1520 bp distal
Rr624268	regulatory region 624268	955 bp proximal
Rr624269	regulatory region 624269	1524 bp proximal