rs48469366 SNP Detail

Summary

• ID
  rs48469366
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153081076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGCCAGGAT GGCCACTTTA CTACACCGTC TTCTATTATA
  GCTCCATACC CAAAGTAAAA GTGCTTGCTC AATACACCGT ATGGCCTTTG GAAGCTCCTG
  Y
  CTGTCGTCTG TAGTGCTGTG ATGTAGGTTG CCCTCTGATG AAACTATAGT TTTTATGGTG
  TTACATCATC TCTATAGAAA CTGCGTTCTT TCTCCATTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147988406	ENSMUSSNP6222487	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48469366					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153081076 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12482	CpG island 12482	1671 bp proximal
Plagl2	pleiomorphic adenoma gene-like 2	Intron
Rr567587	regulatory region 567587	390 bp distal
Rr567588	regulatory region 567588	within coordinates
Tssr20880	transcription start site region 20880	1759 bp upstream
Tssr20881	transcription start site region 20881	1773 bp upstream
Tssr26894	transcription start site region 26894	1222 bp upstream