rs48467050 SNP Detail

Summary

• ID
  rs48467050
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102387437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATGGGAT AGGTGAAGCA
  GGTCTGTGAG CTTCTTTTCT TTTCTTATTT TGTCATAACA TAATTGATGG ATATTGCAAG
  AGATCCTTTT CCATTAATAC CAGGATATCC TTACCCAAGT CATTTTAACC TGGAGAAAAC
  TCAGTGCCTG CCAGACACCG TCAACCTGGG GTTGTGCCAT ATAGAGTGAA GACACCTATT
  K
  CTCTCACCCT TCAGCCTTGG GAGCCAAATA CCTGCTTTGA TGAGGTCATC TCCTCACCAC
  TGTGGGAGGC GGATGTGGAG AAAACAAAGA AATCAGCTTT AACCCTACAG GCTTGCTGTT
  CTCATTGCTG CCCTCAGAGG TTCTGGCTGT CTCAGAGGGC TGGGTTAGTG GTTTGGCAGC
  AAGTGTCTAC ATAAGTAGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147115594	ENSMUSSNP824156	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss320438833	CHEV_2_102397249	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48467050					SNP	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102387437 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pamr1	peptidase domain containing associated with muscle regeneration 1			Intron
				Noncoding-Transcript-Variant
Rr561705	regulatory region 561705			1846 bp proximal