rs48466781 SNP Detail

Summary

• ID
  rs48466781
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:96981601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGT GGGTGCGGTG CGCAGGGGTT
  G
  CGGGGAGGGC TCTGGACCCA GCGGA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145438066	ENSMUSSNP7089926	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss322339975	CHEV_7_104480904	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48466781					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:96981601 () rs orientation: forward

Symbol	Name	Function Class
Kctd21	potassium channel tetramerisation domain containing 21	Intron
Rr400445	regulatory region 400445	2 bp downstream
Rr651402	regulatory region 651402	385 bp distal
Rr651403	regulatory region 651403	57 bp distal
Rr651404	regulatory region 651404	61 bp distal
Rr651405	regulatory region 651405	within coordinates
Tssr67964	transcription start site region 67964	63 bp downstream
Tssr67965	transcription start site region 67965	244 bp upstream
Tssr73573	transcription start site region 73573	299 bp upstream
Tssr73574	transcription start site region 73574	280 bp upstream
Tssr73575	transcription start site region 73575	252 bp upstream
Usp35	ubiquitin specific peptidase 35	374 bp upstream