rs48465985 SNP Detail

Summary

• ID
  rs48465985
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152593012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATAAATC CTAAAGAAGT
  TTATTTTAAA CCAGTTCTTT AGCATTGATA TAATTTTCCA CTTACTAAAG ATGAAAGCAA
  ATTTGGATAT TGATCAGATG GATCCACTTA TTTATTTTTA CATAAAGAAA TCTTGGCTGA
  ATGTTTTATC TTGAACATAG ACCATATTCA ATGTTTTTCA AAGCTGATCA ATATTTTGAT
  W
  TTATGTTCAT CAGTGCCGAG AATGTTGCTT TGCATAGATC TATAGCATAC AGGAGAGGAA
  GTATGTTTAG AGCCATTTCA TAAATTTCTG GAAAAATTTT TCTAATCTGA AGCCAAAATT
  CACTGAATAA TTTCTTATGA AATTCATCAG CAACTCAAAC ATCAATTTTA AAATAAAAAT
  ATTTTAACTC AATACAGTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136104417	ENSMUSSNP2979262	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
ss321029051	CHEV_3_152550339	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48465985					SNP	A	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152593012 () rs orientation: forward

Symbol	Name	Function Class
D3Mit322	DNA Segment, Chr 3, Massachusetts Institute of Technology 322	701 bp distal
Rr587620	regulatory region 587620	496 bp distal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron