rs48460366 SNP Detail

Summary

• ID
  rs48460366
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72281771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTG CACATAATCC AGAATTTAAA
  C
  GCCAGTTAGC TGAGGCACAG AGAAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss133283787	ENSMUSSNP6895109	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321821406	CHEV_6_72254781	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs48460366					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72281771 () rs orientation: forward

Symbol	Name	Function Class
Rr632125	regulatory region 632125	1893 bp distal
Rr632126	regulatory region 632126	157 bp distal
Sftpb	surfactant associated protein B	Intron
Tssr57078	transcription start site region 57078	473 bp downstream
Tssr57079	transcription start site region 57079	457 bp downstream
Tssr57080	transcription start site region 57080	164 bp downstream
Tssr57081	transcription start site region 57081	142 bp downstream
Tssr57082	transcription start site region 57082	253 bp upstream
Tssr57083	transcription start site region 57083	281 bp upstream
Tssr57084	transcription start site region 57084	856 bp upstream
Tssr57085	transcription start site region 57085	1065 bp upstream
Tssr57086	transcription start site region 57086	1143 bp upstream
Tssr57087	transcription start site region 57087	1180 bp upstream
Tssr57088	transcription start site region 57088	1193 bp upstream
Tssr57089	transcription start site region 57089	1994 bp upstream