rs48459246 SNP Detail

Summary

• ID
  rs48459246
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151478104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGCTTTAG AGAAGTGCTC
  TCAGTCTTTC CCAATATATA ATATAATGTT AATATCCAGT ATAATGTTAT ATAGAATAAT
  GTTAACTATG GGTATCTTAA GTATACTAGT TTGAAATATG CCCCTTGTGT TCCAAATGTT
  ACAGTGAGCT TCATCAAGGA ACATTTCTGA TTCATTAGAA TATTCACATG ATTTCATAGG
  W
  TATTATCCTA CACTCTAAAG ATATTAAAGA TTTCACTAAG ATCTGATAAA GACGTTCAAC
  AAATAGAAAT GGGGCTTAGT TTGAAGCTCA CCAAGCTTCA AAAATATAAC TAGAGACAGA
  CCTACAAGGG GGGGAAAGCT CACTACTATG AAAACTTTAA AACATTGAGG AAGAAACTGG
  ATGGTCTCAG GTTCAGGGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss136098035	ENSMUSSNP2495848	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss321026849	CHEV_3_151435431	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48459246					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151478104 () rs orientation: forward

Symbol	Name	Function Class
Rr587415	regulatory region 587415	1408 bp distal
Rr587416	regulatory region 587416	1081 bp distal
Rr587417	regulatory region 587417	1150 bp distal