rs48457555 SNP Detail

Summary

• ID
  rs48457555
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50789379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGGCTGG CCTCTTGCAA
  TAGACATATT TGATAAGGAG GCTGGGGTTC CTGTGCTCCC GATAGACATC ATGAGTGTTA
  CATAGCTATT GGGTGAGACT CAGAGCTCAG GCTACTAGAT GTCCCAAGTG ACTGAGGGTA
  CATCCATCTC CTGTCTCCCC AGCCGCTAGA ACTCAACCTG TCAGGCTTTG TATGGGAAGG
  R
  TTTTACCCAC TGAACCATCT TACTGGCCCC ACAAAATGTC TCTGTGTATA ACTGATCTTA
  CTATTCTGCA GCAAACATAC TGGAAGTAGT CATATGCTAG ATTACTTCAA GATGGCAGAT
  GAATGCAAAG AGCCCCAGAT GGGATTTGGC GGGTGGGACG TTAGTGACCA ACTCTAACTG
  GTTAAATGCA TAGGACTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133184935	ENSMUSSNP2049640	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48457555					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50789379 () rs orientation: forward

Symbol	Name	Function Class
C530044C16Rik	RIKEN cDNA C530044C16 gene	within coordinates
Gm31455	predicted gene, 31455	within coordinates
Gm44109	predicted gene, 44109	within coordinates
Rr543	regulatory region 543	within coordinates
Rr1255	regulatory region 1255	578 bp distal
Rr630076	regulatory region 630076	240 bp proximal