rs48454835 SNP Detail

Summary

• ID
  rs48454835
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:157699040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T AGTGTTATAG ATACAGGAAT GAATAGCTTA CATTGCTGCT
  GTTTCCTCCT TTGTAACTGA ATTTATCCCC CTTCCCCATG CCTTTGCAGT GCACAGTGTA
  R
  GCAGTAGGAA CTGCAGTGGC TGGATCATGA GCAGCACATA CCTGATACTT TTGTTCATAG
  CATAGCTTTT GTTTAACTGC TGCTCCTTTT TATGGTCACA A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136135475	ENSMUSSNP4079622	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48454835					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:157699040 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ankrd13c	ankyrin repeat domain 13c			Intron
				Noncoding-Transcript-Variant
Rr588086	regulatory region 588086			within coordinates
Tssr32505	transcription start site region 32505			202 bp upstream
Tssr32506	transcription start site region 32506			223 bp upstream
Tssr32507	transcription start site region 32507			255 bp upstream
Tssr32508	transcription start site region 32508			315 bp upstream