rs48454031 SNP Detail

Summary

• ID
  rs48454031
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126454971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCGAGCA TCTGACTCAT
  GTGTATTTAA GGGAACTAGC TGATGACTGG ACTCATGCAG CTACGAGGAA AACATGGGAT
  CCAGACCTGT TTGTTACCCT GTGTTCTTAG GGCCTCTTTG ATGCGGCAGC CCTGGTGACT
  CACTTCAGCT CGGTTTGCAG AACACTTGAA TGAAAACTTC ATGCACAGTG ATAGTTAAGA
  R
  TGCTATGTAG ACTGAACTGA TGCGGGATGG TCAAATTCCT ACTTTCAAAT GAAATTTAAA
  AAGGCCAAAG TAAAGGTCTC TGCCTGGTTT CTCCAAAGCA GAGCCTGAGA GAAAGAGGTT
  GTCTGAGAGA GCTGGACGTT GGGTTGGACC AGAGAAACAG GAAAACTGAC GAGCTTGGCC
  TGTTCTGCAC GGCACCGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135838278	ENSMUSSNP6244273	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320947071	CHEV_3_126364240	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48454031					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126454971 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43005	predicted gene 43005			1057 bp upstream
Gm43006	predicted gene 43006			1999 bp downstream
Rr397996	regulatory region 397996			592 bp upstream
Rr584671	regulatory region 584671			within coordinates
Rr584672	regulatory region 584672			540 bp proximal
Rr584673	regulatory region 584673			1933 bp proximal