rs48450872 SNP Detail

Summary

• ID
  rs48450872
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:66987518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCTATTT ATTTTTATTC
  ATTTGTTCAT TCATAAATTT GTTGTTTGTT TTTTTGAGAC AGTCTCACTG TGTATCCTTG
  ACTGGCTTTG AGTGTCTACC TACCTCTGCC TCCTGAGAGC TGGGATTAAA GGCATGCACC
  TTAGCCAGCT GAAATCTCTC TTTTTCCAAA GGGTGATAGT CAATTTGATA CTAAAACACA
  Y
  TGTACAGTGC TCGTGGGACC CAGTCTAACC ATTAGCCTTC AGGCTCTGAT ATGAACCGTA
  AGTGCTCATG AGGCTGAAAG GCTGTAATAG CCTGCTCTGC ACTTCACCCC TCTTAAGCTG
  TATTAAAAAG TGATTGCTAC CTGATCACAT AACCTCGTAA TTCTCCAGCA GCGCATTAAT
  TGTGGTTCAC ACTAAGAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60892266	NES15964122	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48450872					SNP	C	C	C	C	C	C	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60892266	NES15964122	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:66987518 () rs orientation: forward

Symbol	Name	Function Class
Gm15644	predicted gene 15644	1951 bp upstream
Gm36816	predicted gene, 36816	1547 bp upstream
Gng12	guanine nucleotide binding protein (G protein), gamma 12	Intron
Rr379521	regulatory region 379521	579 bp downstream
Rr631571	regulatory region 631571	1889 bp distal
Rr631572	regulatory region 631572	1388 bp distal
Rr631573	regulatory region 631573	895 bp distal