rs48448700 SNP Detail

Summary

• ID
  rs48448700
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:145190447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCGCTAGAG GCCTGGAGGA GGCGGGGCCA AGGAGGAGCA
  TGCGCACGCG CCCTCGCGAG CTGGCCTTCT AAGGGGGAAC GAGCGATCTC GCGATAGTTG
  W
  GAGCGGGTGG CGTAGGTAGC TGTCCTGATT GGCTGGAGAA AAGAATCCAC TCCGGGAGAT
  GAGAAGGCGC CGGGAGGCCT CTGAGAACCT TCCATTTTC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147859512	ENSMUSSNP6329681	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48448700					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:145190447 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15270	CpG island 15270	within coordinates
Gm65281	predicted gene, 65281	327 bp upstream
Rr377358	regulatory region 377358	within coordinates
Rr604377	regulatory region 604377	within coordinates
Rr604378	regulatory region 604378	338 bp proximal
Smarca5-ps	SNF2 related chromatin remodeling ATPase 5, pseudogene	421 bp upstream