rs48446204 SNP Detail

Summary

• ID
  rs48446204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122212239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGATATCTGA TATGTGACCT CTGTGAAAGA GTCTTTAGGC
  CCCCTCACCC CCACCCCCCA AGGGGGTTGT AACCCACTTA CCTGCCGGGG GCATGGTGGC
  R
  CATGCCTTTA ATCCCAGCAC TCGGGAGGCA GAGGCAGGAG GATTTCTGAG TTCAAGAACA
  GCCTGGTCTA CAAAGTGAGC TCCAGGACAG CCAGGGCTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135741282	ENSMUSSNP5123848	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320911465	CHEV_3_122121508	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48446204					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122212239 () rs orientation: forward

Symbol	Name	Function Class
Bcar3	breast cancer anti-estrogen resistance 3	1167 bp upstream
Cpgi13768	CpG island 13768	963 bp proximal
Rr397985	regulatory region 397985	991 bp upstream
Rr584325	regulatory region 584325	221 bp proximal
Rr584326	regulatory region 584326	751 bp proximal
Rr584327	regulatory region 584327	1199 bp proximal
Tssr31494	transcription start site region 31494	1149 bp upstream
Tssr31495	transcription start site region 31495	1182 bp upstream
Tssr31496	transcription start site region 31496	1203 bp upstream
Tssr31497	transcription start site region 31497	1276 bp upstream
Tssr31498	transcription start site region 31498	1395 bp upstream