rs48441193 SNP Detail

Summary

• ID
  rs48441193
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79287246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTCTTCT GAAAGCATTC
  CTTCTATCAT TAACATTTTG GTATGTTTAA GAAACCATGT GAGAAAGATG TTTGATAAAC
  AAAGCGCCTC AGGGAAAATT GCAAAACAAA TTTTCTAACA CTGGTTTTTG GTACAGTATG
  AATCTCAGAA TCCAATTAAT TAAAAAACAT ACTAAAGTCT CTAAATTGAG CTACTCTTAA
  R
  TTCCCATTTC TACATGCACC AAAGCGTAGG GATCTATATT CCAAATTCTT GGTTCCTCTT
  TGGCATTCCT AGGATTATTT ACGGTCACTG TGGTGTCCTC TGTGTTCTAG CAGAGAGCCA
  CACTGGAGAA ATCGCAACTG GCAGTCAATG TTTAACTGGT ACTCCACCTG GACATTCCAT
  TCTGTTTCAA GCTTTGTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135371741	ENSMUSSNP5057248	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs48441193					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79287246 () rs orientation: forward

Symbol	Name	Function Class
Rr578508	regulatory region 578508	1511 bp distal
Rr578509	regulatory region 578509	220 bp distal
Rr578510	regulatory region 578510	30 bp proximal
Rr578511	regulatory region 578511	1499 bp proximal
Spmip2	sperm microtubule inner protein 2	Intron