rs48438701 SNP Detail

Summary

• ID
  rs48438701
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:22042118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATC TCACTGTTAG TCTAGACTCA
  Y
  TACCAAAACC AGACATGAAT ATTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134684906	ENSMUSSNP6238380	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320683715	CHEV_3_21886876	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48438701					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:22042118 () rs orientation: forward

Symbol	Name	Function Class
Rr367416	regulatory region 367416	within coordinates
Rr367417	regulatory region 367417	264 bp upstream
Rr574182	regulatory region 574182	552 bp distal
Rr574183	regulatory region 574183	within coordinates
Rr574184	regulatory region 574184	334 bp proximal
Tssr32754	transcription start site region 32754	117 bp upstream
Tssr32755	transcription start site region 32755	303 bp downstream
Tssr32756	transcription start site region 32756	338 bp downstream