rs48438394 SNP Detail

Summary

• ID
  rs48438394
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:120527179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGAGTCT CTTTACCACA
  TAACCAGTTC TAGAACATTC TCAGGAGCTG CCTGACCTCA GACAAAGTCC CCTGACCGAT
  GGTTCTTAGC ACGTGACTTC CTGTGGTGTC TTTCACCTCG TCCTGAGAGC CGGCCTCTTA
  AAGCAGCCTG CTGCCCTTCT GTCCTGAGGA CCTCAGTCTC CTGCCTGGGC AGTGTCTGCT
  S
  AGATCTTTAA ATTCAGTCTC CCTAGAGACT GGGAACTCAG TTGGGGCACA GACAAAGCAT
  GCCTTATCAT CATCATCATC CCTAGGACAA CATTCTTTAT TTTTATTTAT CTTTTATCAC
  TCAAACCTTG TGTCTTTCTA CTAATAGAAC TTCTCTGCTA TGGAGGTTAA GGCAAGCTTC
  AAAGTCCCAG CACTTGATGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147346066	ENSMUSSNP735655	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48438394					SNP	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:120527179 () rs orientation: forward

Symbol	Name	Function Class
Rr598841	regulatory region 598841	1230 bp distal
Rr598842	regulatory region 598842	within coordinates
Rr598843	regulatory region 598843	465 bp proximal