rs48438149 SNP Detail

Summary

• ID
  rs48438149
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:168303764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAA CAGCTGACTG GAGCGACTTC
  Y
  GTGCAATGCC TACATGTATG TGTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146068017	ENSMUSSNP4806819	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320093851	CHEV_1_170406326	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48438149					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:168303764 () rs orientation: forward

Symbol	Name	Function Class
Gm39696	predicted gene, 39696	within coordinates
Rr422866	regulatory region 422866	1904 bp distal
Rr422867	regulatory region 422867	within coordinates
Rr422868	regulatory region 422868	106 bp proximal