rs48437521 SNP Detail

Summary

• ID
  rs48437521
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38341972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTGCATT ATAATAGAGA
  AGTGACTGTG TAATAACAGT CTGTCCACTG AAATGACGAA ATACCATTTA GTGTGTGTTG
  TGGACAACTG TTTACTTTTG TGTTGTAGTC AACTGTTTAC TTGACTTTGG GTCTAATTGA
  CTCAGTAAGC TCAACCTCAT TCAGGCTGAG ATCAGTCAGG TGCAGTGGAG GAAACAGACT
  R
  TCAACTTCTT TCTGATTTTT CTACATCTTT TCCTGGAAGA ACATTCAGCC AGATTCATAC
  CATCATTTTA CAACAGCAGG TTCATTTAAA AAAGACTCCC ATAAGGAAAC AAAAAAACTT
  ATGCTCACCT TGGGGAAGCA TTAAGCTCCA TCTCCATCAG TTGCTCCAGC TGGCCTTCCT
  TACCCCAAAG ACACCTGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss60391348	NES15888596	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs48437521					SNP	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60391348	NES15888596	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38341972 () rs orientation: forward

Symbol	Name	Function Class
Rr575656	regulatory region 575656	1286 bp proximal