rs48436664 SNP Detail

Summary

• ID
  rs48436664
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:52865528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAGGAGT AAAGGTGGCT
  GGACTTCCTG ATGGCCTCTG TCTGTCCGCA CCTGCTATTC CTGCAGGCTC ACCTCAGTTC
  CCCTGTTGTT TATCTCTGTC TCAGGGACTG ATTCCCTTCT GTGAAGTTCT CTTTCAGACT
  GGAAAGCCAC CCAGAATCCA CTCCAGCCCC ACTGCCCTTC CCTCCCCGAG GTCAGATTGC
  R
  CTTTTGAGAA TATTGTGGGT CATCTTTCTA CTGTCTGATA CAGGATTAAT CCCTGTCTCC
  GGTTTACAAC GGTCCCTCTC CAATCCCAGC CCATGCCTGT ACAAGAACAA TGTCAAGTCT
  GCCCATAACT TAAGTTTTTA AGGATTCCAT CCCACACTGA TCCGTGTGTG GATAATTATC
  AGCAGGGCCA CAGGAAGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61796104	NES17726109	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	G	A	A	A	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48436664					SNP	A	A	G	A	A	A	G	A	A	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61796104	NES17726109	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:52865528 () rs orientation: forward

Symbol	Name	Function Class
Rr479878	regulatory region 479878	351 bp proximal
Rr479879	regulatory region 479879	650 bp proximal