rs48436449 SNP Detail

Summary

• ID
  rs48436449
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153648150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CATTTGTGT GTCTATATAT GTGTGGTgag
  ggtacaggat tctctggagt tggagttaca tatagttctg agccacctaa catcagtgtt
  gagaagccaa ctcaggccct ccgcaagagc agtaaatatt AAATGAGAAA AAAATGTAAA
  Y
  TGCTCAGTCA TTCTCATtct ctctctctct ccctcccttc caccctccct ccttccgtgt
  gtgtgtgtgt gtgtgtgtgt gtgtgtTCAA GTGCAGTTTT TGGTGGTGCT Gtttgttttg
  tttttgagac aggtctcaat acgtagctgt                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136115256	ENSMUSSNP6750067	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321031887	CHEV_3_153605477	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48436449					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153648150 () rs orientation: forward

Symbol	Name	Function Class
Acadm	acyl-Coenzyme A dehydrogenase, medium chain	Intron
Cpgi13964	CpG island 13964	1467 bp proximal
D3Mit88	DNA segment, Chr 3, Massachusetts Institute of Technology 88	1405 bp distal
Rr587801	regulatory region 587801	454 bp proximal
Tssr36252	transcription start site region 36252	1912 bp downstream
Tssr36253	transcription start site region 36253	1948 bp downstream