rs48433342 SNP Detail

Summary

• ID
  rs48433342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65835585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTACACTCA ACAGTCCCCT
  GCGGGCAGCG GTGGCAGTGT GGAGGTGGCA GGGAACTGAA CTGTGTCTCC AGCCCAGTAT
  CCCTGGGACA GTTCCTCCCC AGCGGGACCT GCCTGGTTAG ATCAGCCCTA GGTCATCCTG
  CTTGACCCTG AGCAGAGGTA GTGTCCATTG GTGACAGTCA CCTCTGACCC ATGAGGATGA
  Y
  TGACAGTGTT TAAGATGCCA TCGACCTCAA TTTTCTAGGC CTCTAGCTGA AGGCTCTCCA
  CCTGCCTCAG GCCTGGCTCT ATTTTTGCCA CCAACTCCTT CCTCCCAGAA CTTTTTTGGC
  TCCTTCTTAA AAAAAAAAAG AAAGAAATGG GTCTGGAGAG ATAGTTCATT GGTTAAGAGC
  GCTTGTTGCT CTTGCAGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60417556	NES15922250	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48433342					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60417556	NES15922250	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65835585 () rs orientation: forward

Symbol	Name	Function Class
Gm35039	predicted gene, 35039	within coordinates
Gm65138	predicted gene, 65138	within coordinates
Rr577758	regulatory region 577758	305 bp distal
Rr577759	regulatory region 577759	9 bp distal
Rr577760	regulatory region 577760	497 bp proximal
Rr577761	regulatory region 577761	1203 bp proximal
Rr577762	regulatory region 577762	1504 bp proximal
Tssr33471	transcription start site region 33471	1191 bp downstream
Tssr33472	transcription start site region 33472	1251 bp downstream