rs48423921 SNP Detail

Summary

• ID
  rs48423921
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116945457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATGTTAG TCCCTTACTA
  ATACCCCTTT AATGGCTTCC CATTGCTTTT AACACTTACA TTCACAACAT GGCCTCTAGG
  TTCTGGTCCC TACATGCTTT TCTAGATTCT TTAGCCATGG TTTCTAACTT TTCTGGCCCT
  GGAATGTTTC AGGCCACCGC ACTCTCTAGA GTTTTTTCTT ATGGACTTGC CCATGCACCT
  Y
  TCTATGCATA CCTCAGCATC CATTGTCTAT GAAACACTTT TTATTTCTTA AAAAAAGAAA
  GAAAATAGAT TATTTTTAGA GCAATTTGAT GTTCTTTGCA ACATTGAGAG GACAACTAGC
  CTCCCTGACT TCTCCTTCCT TAGTAGAGCT CTGCCTGCTT CATCTACTTT TGCTGTTGAC
  TCTAAGTCCC ACATTCTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60434909	NES15943021	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48423921					SNP	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60434909	NES15943021	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116945457 () rs orientation: forward

Symbol	Name	Function Class
Rr583834	regulatory region 583834	1206 bp proximal
Rr583835	regulatory region 583835	1304 bp proximal