rs48423352 SNP Detail

Summary

• ID
  rs48423352
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172196601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGGTCAG ATAAAGACAG
  CATTCCTCGG GAACCCGTGA AACTGGTTCT CTCTCTACCA AATGGAGTCA TTCTCCTTAC
  TTCTGGCAGA AGGGTCATAG CTCTCCCAGT AGTAGACCTG TGGTACCTAA CGGCGTATCA
  GGGCATGCTG GTATCACAAG ACCCTGATAC ACATTTCAGT GTTCCTAGCC CTTCTTGTCC
  Y
  CCCTACCCTA AACTGCCCCC AACTCACAGG CTTCCCGTCC CCCAGCTGCC TGTCCTTATA
  ACCAGCTATT CTCTGTCCTC TTGGCTCCTG GTCCTCTCTG TGCTCGATTC TCTATCCTGT
  GCCAGTTTCC TCTCCGTCTC ACGGATCCCC CGGCCATGTT CAGTCCACCC CTCTCTCTCT
  CTCAACTTCA GATGCCTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148314419	ENSMUSSNP2886593	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320618297	CHEV_2_172180181	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48423352					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172196601 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aurka	aurora kinase A			1509 bp downstream
Fam210b	family with sequence similarity 210, member B			Intron
				mRNA-UTR
Rr571655	regulatory region 571655			899 bp distal
Rr571656	regulatory region 571656			636 bp proximal
Rr571657	regulatory region 571657			927 bp proximal
Tssr21947	transcription start site region 21947			1385 bp downstream