rs48420347 SNP Detail

Summary

• ID
  rs48420347
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121219282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGG AACACAGGCA GGGGACAGCG
  Y
  GCTCTCTGTT CTCACCTTTC CTCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135720508	ENSMUSSNP5002583	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320903384	CHEV_3_121128551	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48420347					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121219282 () rs orientation: forward

Symbol	Name	Function Class
Cnn3	calponin 3, acidic	908 bp upstream
Cpgi13758	CpG island 13758	323 bp proximal
Gm42928	predicted gene 42928	within coordinates
Rr397975	regulatory region 397975	684 bp upstream
Rr584073	regulatory region 584073	374 bp proximal
Rr584074	regulatory region 584074	1148 bp proximal
Tssr31441	transcription start site region 31441	862 bp upstream
Tssr31442	transcription start site region 31442	935 bp upstream
Tssr35415	transcription start site region 35415	1839 bp downstream