rs48419525 SNP Detail

Summary

• ID
  rs48419525
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141295637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTTATA GAATTCAATC
  AAAGCAGCTT TTGTTCCGGA GAATTCTATT TGCTTTTTAA AAGAAGTTCT TTTTGTAAGT
  GTAACCTATA TTATTTTCAT GTCCCCTTTC TGGTCCTTCT TTGAGCCATC TGTATTTTTT
  CTGTTACCCA CTGTGATAGC ATATTCTACC ACAGATGCCG CCCATGATGA GACAGGAATG
  Y
  TCCCCTCTAT TGCAGTACAT CCTAAAAGGG AGTCTGGTTT TAAAATAGGA CAATTCATGA
  ACTTAGACCA GGTTATCACT TTAAGGGATT ATTTTGTGCA TTTTAGCATA TATGTCAATA
  AAACAAAGAC TTACAAAGTT TCACTGACAT GTTTATCAAT CCCCTCTTAA AAATAAAACT
  GTTCTTGCTA ACAGCTAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61092033	NES16588679	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		T	C	C	T		C
ss320993577	CHEV_3_141252840	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48419525					SNP	C	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61092033	NES16588679	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141295637 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586339	regulatory region 586339			7 bp distal
Unc5c	unc-5 netrin receptor C			Intron
				Noncoding-Transcript-Variant