rs48415259 SNP Detail

Summary

• ID
  rs48415259
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153300355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTCTTAA TATTTGGGCT
  GTAATTCATA TGAAGACATG AAAAATCTGG CAACAGTAAA AGATTTCTAA ACATAAAAAA
  AAAAAAAAAA CCCAAAAACT AATTCAAAAC CAAGCGTGTA CTGCACCCAA GGTGTTTGGG
  GCAGTACTTG CCTGTGCTGT ATCTAGTGGC TTCTTGGCAG CCTTGGGGTG GCGCACACAG
  Y
  GCCTGCACTT TGTCCCATGT GTACAGCCAT GCCAAGTGCC AACAGATGTC GCTGGAAACC
  CCTCCACTCA GCTTCTAGGC CGCCACGCCT ACATTATGAA TTTCTTTACA ATACACACAA
  CGTTGTCTGC TCTTATAGGA GCACCGGCCT TACTGCAGAG AACGAAGATT TGATCTTTCT
  CCCTCTCATT TCTAGGGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136109457	ENSMUSSNP1879249	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48415259					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153300355 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm32721	predicted gene, 32721			within coordinates
Gm52633	predicted gene, 52633			1384 bp upstream
Rr587708	regulatory region 587708			35 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant