rs48414906 SNP Detail

Summary

• ID
  rs48414906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86805471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCTTTTA TGTTAAACTC
  TGCTGTTTCT GGGAATGCTA AAAGCTAGAA TTCTTCACAT ATGTGGACAA AGTTATATCT
  GGATCTTTGA GTTCTGTAAC AGGAAAAAAA GAAAAATTAA AAAAAAAACT TTCCCACTGT
  GACTTATCAC AAGAAAGGCA TTCTATCTGT AAGAATATTT GAAAGGCCTT GTTTTCTATA
  Y
  AACTGTTTAA AAGTTCAAAG CTTTGGTTCT AACTAACCAA ATTTCACCAT GTGCTTAAAT
  AAAATTATAA AACGACCAGT ATTCCTCTTT GCAGATCATT TATTCTAGTC AACTTGTTTA
  TAAATACATG GGTTGCACAC TAAGAATTTT CATTTATCTT TTTCTTTTTC CCTTTTGCAG
  TGCTGGGCAT GGAACCTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135450670	ENSMUSSNP6556057	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs48414906					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86805471 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dclk2	doublecortin-like kinase 2			Intron
				Noncoding-Transcript-Variant
Rr579411	regulatory region 579411			157 bp distal
Tssr33911	transcription start site region 33911			1269 bp downstream